A new mercenary ninja named Masaharo Endo, who is a jonin of the Hidden Leaf Village is preparing for his new dangerous mission to hunt down Code and the Shinju Clones and prevent them from causing chaos within the Leaf Village.

The story took place during the attack of the God Tree Clone in Hidden Leaf Village, Boruto Uzumaki is preparing for his new mission to stop the God Tree Clone from attacking Hidden Leaf Village.

Karashiki Otsutsuki and his sister Momoko Otsutsuki of the Hidden Waterfall Village were preparing for their dangerous journey in the modern day shinobi world. Their story took place following Naruto and Hinata being sealed away by Kawaki, the siblings were joined by Naruto's second-born second-born child named Akio Uzumaki for their mission to travel back in time in order to stop Code's right-handed man from messing the timeline.