My personal favorites
170 stories
naruto :babies again by chi-uzumaki-hozoki
chi-uzumaki-hozoki
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    Parts 7
one night naruto and sasuke were training when they got pushed by a unknown force and into the dirt what will happen when they awake and find themselves as babies again? with no memory of everybody else except thier friendship ? press the orange button that says read to find out sayinora !
the missing son by morningstarXrushiasu
morningstarXrushiasu
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    Parts 10
Naruto Gremory was born with even higher amounts of energy than his brother Sirzechs, but he didn't inherit the power of destruction. He became a hero of the civil war with his mastery of time space magic but disappeared soon after. What happens when he returns after so long? What happens when he meets his younger sister?
Konoha's New Number One....Baby?! by Animebook3
Animebook3
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    Parts 28
It all started with a mission. He had to take care of a baby. Easy, right? Read how Naruto takes this journey.
Naruto Uzumaki and the Namekaze Clan Secret by HeartofGreed
HeartofGreed
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    Parts 4
Naruto was looking at a large deserted temple it was deep within a cave. The temple has been protected by the cave and had been waiting for eons awaiting the one who has been chosen by his ancestors. Naruto touched the white lime stone as he walked up the ancient steps which has been stepped on in hundreds if not thousands of years as he acended Naruto got flashes of ancient memories of a man that looked like him holding a sword fighting off a horde of men trying to kill him and his wife.
Naruto neglected by His family by forgothetime
forgothetime
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    Parts 7
Naruto was born a male and where a world is filled with only girls that have Chakra and Males are used as slaves or butlers for high rankers.
The Host Club's Fox(boy x boy)(discontinued Can Be Adopted) by gingerSNAPPED4good
gingerSNAPPED4good
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    Parts 7
After finding out what was happening to his nephew Naruto in Konoha due to Naruto not visiting lately, Yuzuru has Naruto moved into the second​ Suoh mansion with Yuzuru's son, Tamaki. He is then enrolled into Ouran, a private high school for rich kids. He becomes friends with Haruhi and the hosts and they gave him the role of tsundere type because of his caring, cheerful yet sarcastic and quick-tempered attitude. But soon the hosts want to be more than friends, and Naruto, who has never been in a situation like this, doesn't know what to do. Tamaki is to blinded by his puppy love for Haruhi that he doesn't notice his cousin's problem,leaving Naruto on his own. I own neither Naruto or Ouran Highschool Host Club.
Brother of a Magician (Naruto x Hunter x Hunter) by UzumakiLegacy
UzumakiLegacy
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    Parts 5
Naruto was found by Hisoka after he finally snapped, killing a mob of attacking villagers. He asked Hisoka to become his brother. Hisoka agreed. What will happen to our favorite blond shinobi and pink haired magician? No known pairings, takes place 4 years before the series.
Lost in the Hunter world by itsokAy33
itsokAy33
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    Parts 16
Sasuke's death hit Naruko much harder then anyone else. At her weakest state the kyuubi manages to take over and the hokage is forced to make a split second decision. To transport the young girl to another world. A universe where only she has a tailed beast within her and a power much different to everyone else. How will Naruko survive in the hunter world and will she ever be able to return home?
One Piece x Naruto crossover: Finding my Truth by ALL222
ALL222
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    Parts 16
Naruto is raised alongside Luffy in Foosha Village after his pirate parents are killed by Garp. Follow Luffy and Naruto through their childhood adventures and watch the world be shaken when the two young men set sail. Updates are once a week unless I say otherwise :) Disclaimer: I don't own the picture on the cover, Naruto or One piece.
Hunter X Ninja by Neko_Hikari
Neko_Hikari
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    Parts 7
One day, he's an energetic, optimistic, idiotic ninja prankster. The next day, he's an experienced, composed, observant Hunter candidate. Probably the only thing that never changed was the mask shielding both mind and heart.