Magic And Chakra Unleashed: The Last Jinchuuriki.

For over hundreds of years, mankind's life in Equestria were nothing more, but tormented slaves and servants. Although some other species of resistance think this just isn't right and wanted the humans to have their freedom, but sadly it's been proven too difficult from every socity that's preventing them of doing it. Several weeks later after Princess Twilight Sparkle's ascend into being an Alicorn to join her fellow princesses, a human teen from his own world of dominant humans wakes up in a prison cell with some damaged burn body marks and realizing that he's in another world full of Anthro species.

This is the story of Ben Renwick, the last Shinobi warrior and the hope for humanity's freedom.

'Based on the Your human and you-universe, where the humans in Equestria are treated as mindless (sort of) slaves by other species, this takes place before Twilight's Kingdom and return of Lord Tirek.'