Melody Ann Jones has been at the Spy Academy for as long as she can remember. After her parents were murdered when she was nine, Rose and her brother, Romulus, had taken care of her. One night, a boy shows up at the academy, someone who might know Melody better than anyone else. As she starts to fall for him, a man who says he's her father kidnaps her. Will Melody be able to figure out her entire past by herself, or will her so called father and old boyfriend turn her against her friends?