An unexpected miracle (updates are slow)

What if the rogan relationship went in a different direction after the episode Jews and chinese food? What if Rory had discovered some life changing news? How would it effect the remainder of the series? Their relationship will progress differently from the original series
and anything in their storyline, disregard it after that episode. AU but fic tries to follow the original storyline from the show as best as possible. Starts from the last scene of the episode right up to the series finale.

Disclaimer - I do not own Gilmore Girls.