After the defeat of Team Plasma for a second time, a new team appears from the shadows to destroy the peaceful atmosphere of Unova. The mysterious unknown team, Team Enigma as the media calls them, steals Pokemon from houses in the middle of the night to use them for their nefarious reasons. Our story begins when one small Oshawott named Waves and his best friend Lil Lil the Lillipup are stolen by Team Enigma. However, before they are taken back to the evil team's base, Waves and Lil Lil escape and now must find their way back to their trainer's home. Along the way they'll meet many different Pokemon and learn more about this strange Team Enigma that has shown up to plague Unova and all its inhabitants.