A few years following Shao Kahn's defeat, Shinnok escapes the Netherrealm and launches an invasion of Earthrealm. Shinnok personally goes to Raiden's Sky Temple with the intent to poison the Jinsei, the life force of Earthrealm. Shinnok nearly imprisons Raiden and Fujin within his amulet, only for Johnny Cage to intervene and knock the amulet from his hands. Shinnok incapacitates Cage's companions, Kenshi and Sonya Blade, but Johnny manages to hold off the former Elder God and pass the amulet over to Raiden. The tables turned, Raiden imprisons Shinnok within his own amulet. At Fujin's recommendation, the two gods take the amulet to the Elder Gods, seeking their guidance.
Soon, after Johnny and Sonya travel to Quan Chi's fortress in the Netherrealm, hoping to take down the necromancer and his revenants before they can cause any more trouble. In the fight against Quan Chi, Scorpion, and the revenants of Jax and Sub-Zero (Kuai Liang, now returned to a human form), Cage is stabbed, and Quan Chi begins summoning a revenant as his soul leaves his body. Sonya manages to defeat Quan Chi, however, and Raiden is able to reverse Quan Chi's spell, saving not only Johnny Cage, but also returning Sub-Zero, Jax, and even Scorpion (yes even Scorpion, his real name was Hanzo Hasashi before he and his family were killed) to life.
In the years that follow, Johnny and Sonya marry and have a daughter, Cassie, and later divorce. Hanzo reinstates his Shirai Ryu clan while mentoring Kenshi's son Takeda, and Sub-Zero becomes the new Grandmaster of the Lin Kuei after killing Sektor who was the grandmaster before.
Twenty years after Shinnok's defeat, Johnny Cage assembles a team of fighters composed of Cassie, Jax's daughter Jacqui, Takeda, and Kung Lao's cousin Kung Jin. After undergoing a training exercise with Sub-Zero, they are deployed to Outworld to resolve a civil war between former empress Mileena, who has obtained Shinnok's amulet, and Outworld's current emperor Kotal Kahn, with whom Earthrealm has a peace treaty. On Earthrealm, Sonya captures Kano and forces him to reveal where Mileena is keeping the amulet. Armed with this information, Cassie's team aids Kotal in recovering Shinnok's amulet and capturing Mileena. After executing Mileena, Kotal decides to keep the amulet in Outworld's hands, and takes Cassie and her friends hostage to prevent Raiden from retaliating. Kotal's second-in-command D'Vorah, who is revealed as a double agent for Quan Chi, steals the amulet. Cassie and her team escape captivity, and inform Sonya of D'Vorah's intentions.
Jax and Kenshi, aided by Sareena (a demon from the Netherrealm purified by the aid of Bi-Han long time ago), lead an assault on the Netherrealm and manage to capture the weakened Quan Chi (weakened because Shinnok was the source of his powers, and Shinnok is captured...), who is brought back to Earthrealm and held at a refugee camp. Scorpion, having learned from Sub-Zero the truth of Quan Chi's involvement in the deaths of his family and clan, infiltrates the refugee camp alongside his clan with the intent of assassinating Quan Chi, defeating Kenshi, Johnny and Sonya in the process. As Hanzo prepares to kill Quan Chi, D'Vorah arrives with the amulet. Quan Chi manages to finish a spell moments before being beheaded by Scorpion, releasing Shinnok from captivity. Weakened by the Shirai Ryu's previous attack, Johnny is taken prisoner by Shinnok and D'Vorah. With the aid of Quan Chi's revenants, Shinnok and D'Vorah assault the Sky Temple, where they subdue Raiden. Shinnok then enters the Jinsei and corrupts it, transforming himself into a powerful demon in the process.
Cassie's team pursues Shinnok, only to be intercepted by Kotal Kahn and his army. They tell him about Shinnok's return and Kotal decides to kill them, hoping to appease Shinnok and buy time to bolster Outworld's defenses. Sub-Zero and his Lin Kuei comrades appear just in time to repel the Outworld forces. At the Sky Temple, Jacqui and Takeda occupy the revenants, while Cassie and Jin enter the Jinsei chamber. There, Cassie defeats D'Vorah and Shinnok, and rescues her father. A grievously-wounded Raiden then purifies the Jinsei, stripping Shinnok of his powers and forcing the revenants to withdraw. Sonya and her soldiers arrive, and the Cage family reunites.
Some time later, the revenants Liu Kang and Kitana are revealed to have assumed leadership of the Netherrealm. Raiden, hinted to have been corrupted in the process of purifying the Jinsei, warns them they will face "fates worse than death" if they threaten Earthrealm. As a final warning, he presents them with Shinnok's severed, yet still living head. (Shinnok was an Elder God, impossible to kill... Yet he was beheaded).
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(A/N) :
The original story of MK has just ended. Thank you guys for reading :) As I said before, I will start working on a new book with each character its history and a drawing for it when this book reaches at least 255 views and 50 votes. I will also start working on my made up continuation when this story reaches 270 views and 60 votes. Thanks again for reading :) Hope you guys liked it.
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Mortal Kombat
RandomDisclaimer : This is the original story of Mortal Kombat. However, at chapter 12 this story would come to an end and my made up continuation starts at chapter 13.