S-Rank Naruto

Chapter 6

Disclaimer: I don't  own Naruto, if I did then Naruto would be able to fight his opponents  without relying on luck and last second power ups.

Note:  I'm sorry about this, but I was having a really hard time continuing  the story, so I decided rather than abandoning it I would do a summary  chapter to cover highlight points that I was planning on including. I  would be fine with someone picking up the story message me about it and  you can use the whole thing as long as you credit me. I may also pick  this thing back up myself eventually. Sorry for not being able to  complete it.

Summary

Naruto  and company return to Konoha and report to Tsunade. Sai tests Naruto, is  immediately defeated and Naruto drops him off at T&I. Tsunade still  sends Tenzo and Sai with Naruto and Sakura to the Tenshi bridge  mission. The main difference is that Sai is more respectful to Naruto as  he has shown superior talent. The meeting at the bridge is again  interrupted by Orochimaru. Tenzo and Sakura combat Kabuto and capture  him while Naruto fights Orochimaru with Sai observing the battle in the  background. Naruto uses the Kyuubi's chakra to keep Orochimaru on the  back foot as the corrosive nature of the chakra makes it harder for  Orochimaru to regenerate. As Naruto is in control of himself and a  sensor Orochimaru can't retreat when he is on the back foot in the fight  and unleashes his eight branches technique. This is easily countered by  Naruto's chakra chains as they are perfectly suited for fighting giant  monster like creatures. When that failed Orochimaru released his  soul-self (the white snake thing Sasuke fought) in a last ditch effort  to survive by taking over Naruto's body. Naruto was expecting it and  used a scroll that he and Jiraiya prepared to seal Orochimaru's  soul-self in an enclosed area. Naruto then goes on to explain that  Orochimaru's immortality technique was impressive as it created a chakra  construct that could hold his consciousness, but it had a fatal flaw.  The issue was that the construct needed a host to stabilise itself. That  meant that all Naruto had to do to kill Orochimaru was prevent him from  finding another host, which is what the seal array he and Jiraiya made  was meant to do. The rest of the team gather to watch as Orochimaru's  soul-self disintegrates. They wake up Kabuto and force him to watch  before interrogating him to find Sasuke's location. They then move to  the base where Sasuke is staying after securing him with Sai's ink,  Tenzo's wood and Naruto's seals and in Tenzo's direct keeping. When they  reach Sasuke he taunts Kabuto about being captured before attacking  Naruto with his sword. Naruto grabs his wrist to block and Sasuke  congratulates him on blocking the correct way. He then enters Naruto's  mindscape to suppress the Kyuubi, but is surprised to find that he can't  as Naruto is the one controlling the flow of the chakra rather than the  Kyuubi. Naruto tries to convince Sasuke to come back with them stating  that as long as Sasuke remains by his side Itatchi will come to him  because of the Kyuubi and the fact that he defeated Orochimaru. Sasuke  is unconvinced until Naruto explains that Sasuke would be coming with  them because he had already sealed his chakra as Sasuke let him hold his  arm for to long. When Sasuke challenges the proposition because chakra  sealing isn't used in combat Naruto counters that the reason is that it  takes almost double the chakra you want to seal in a person in order to  do so, but that isn't an issue for him as his chakra reserves are almost  infinite compared to a normal ninja's. When they leave the mindscape  Sasuke tries to channel chakra and finds he can't before agreeing to  come with them as they have proven to not be useless. Kabuto is  interrogated and then executed.

They take Sasuke to Tsunade's  office and try to get Sasuke to be officially reinstated when Danzo  barges in and demands that he be executed as an example. Tension is high  before Naruto asks why Danzo has a sharingan. Danzo is apprehended and  they find that he has Shisui's eye in his head and the senju sharingan  arm. There is a bit of time when they kill root agents trying to free  him, and they look over his root files. Eventually Sasuke is  probationally reinstated under the same rules that Konoha has for any  other missing nin. Which means that he was given a seal kill switch that  can be activated by the Hokage or their minder which in this case was  Naruto. Danzo was unofficially found guilty of treason, but officially  charged with bloodline theft and Sasuke is allowed to execute him as he  had stolen Sharingan. As part of his reinstatement Sasuke then guides  Naruto's team through the bases that Orochimaru had. They pick up Karin  and Suigetsu individually and take them back to Konoha, then when they  are on the way back from the base that held Jugo they are ambushed by  Itachi, Kisame and Tobi. Naruto notices Zetsu, but can't do anything as  he is forced to fight Kisame solo while Sasuke fights Itachi and Tobi  distracts the rest of the group. Sasuke's fight with Itachi is like  cannon except the eight branches technique is never used. When Naruto  fights Kisame he finds that Samehada doesn't absorb nature chakra, and  decides that's because if it did then it would kill its wielder or turn  to stone itself. Naruto and Kisame have a huge slugfest, but Naruto  eventually wins and Samehada takes a liking to his chakra and becomes  his sword. After the other two fights are over Zetsu notifies Tobi and  he disappears kidnapping Sasuke and taking Itachi's eyes. Naruto feels  it happen and the team return how with Jugo in tow. Tobi tries to turn  Sasuke against Konoha for revenge, but Sasuke states he can't as the  still has the kill switch. In addition to that Sasuke argues that Danzo  is completely to blame as he held one of Shisui's eyes which is capable  of Kotoamatsukami which has the ability of mind control, and he had  already had his revenge on him. In a fit of rage Tobi kills Sasuke.

Later  there was a sighting of Kakazu and Hidan in fire country and Naruto's  group is sent out to deal with them. During training before the fight  Naruto learns how to seal using only his chakra. He also trains Karin in  the use of chakra chains. The fight with Kakazu is a bit more one-sided  than in cannon, but generally the same. Hidan on the other hand is  fairy easily demolished and Naruto seals what is left into immobility  (his head, torso and limbs separate). Naruto then realizes that this  isn't the real Hidan it is actually a seal and blood based clone. The  blood base makes it seem real and the seals make it an immortal clone.  The group then follow the chakra thread attached to the Hidan clone back  to where it comes from. On the way there Zetsu strays to close and  Naruto manages to eject him from the ground there is a fight, but  without his ability to hide Zetsu is reasonably easily dealt with. When  he dies Tobi immediately shows up. Naruto stabs him with a chakra chain  and Tobi laughs at his saying he will need to do much better to hurt  him. Naruto replies that from the observations of the previous fight he  never changes his momentum or teleported while he was phasing through  anything. So Naruto would only have to wait out his technique and/or  chakra in order to win the fight. He is right and Tobi's voice changes  ranting at them at how he was Madara Uchiha, how he was immortal, how he  killed Sasuke and how he ran the Akatsuki from the shadows. When the  time on his technique runs out there is a spatter of blood as he's  impaled, but he uses the Izanagi to change reality so that the injury  never happened. Tobi then goes on at how he only had four spares left  after everything in the Kamui dimension was destroyed in a massive  explosion and how he would never forgive Kakashi for that. There is a  huge fight, but it ends when Naruto impales him again and again waits  out the time necessary. During the fight Naruto figures out how he needs  to fight with Samehada, which was by using it as a shield for jutsu  rather than as a weapon. They then find the Jashinist temple where  Hidan's real body is in stasis while his spirit inhabits his clone. They  then execute Hidan and destroy the temple before returning to Konoha.

Later  Jiraiya comes to Konoha and states he found out who is running the  Akatsuki, the Amekage. He then takes Naruto with him to confront him.  During the training Naruto did after defeating Tobi with Samehada he  became a facsimile of a true sage by running sage chakra through  Samehada enough that it became able to absorb it for him. They confront  Pein and Konan outside of Ame. Jiraiya manages to defeat Konan while  Naruto was holding of the six paths of Pein and then together they  defeat Pein reasonably easily. However, Naruto was forced to use a  combination of the Kyuubi's chakra and nature chakra to complete the  feat. They confront Nagato directly and along with the prowess they  showed him and the fact that Tobi had been defeated he is convinced to  follow their path to peace and allies Ame officially with Konoha. In the  following years there are a couple more scuffles, but eventually all  the nations are allied. It started when the new Mizukage joined the  Suna-Konoha-Ame alliance and then after some fights that were put up in  protest the Raikage and Tsuchikage followed suit. Eventually when Nagato  dies from the demands of the six paths technique as well as the  rinnegan Naruto is gifted the eyes. By this point Naruto had completely  mastered sage mode and the Kyuubi's chakra, but he can't do a full  transformation as the Kyuubi hates him. He however is able to use all of  it's chakra as his own is strong enough to overpower it. After Naruto  spends years mastering the rinnegan he uses a combination of the eyes,  yin-yang release, Orochimaru's immortality technique and Hidan's clone  technique to create a body of pure chakra for himself and places his  soul inside of it. This has the side effect of destroying his body and  freeing the Kyuubi, but rendered him as immortal as a bijuu. He did so  that even after he would have normally died he could combat the Kyuubi  and stop it from destroying whatever it wanted. He and the Kyuubi then  spent the rest of eternity in endless combat.

Note:  Well that's the summary, not sure if the ending of the story is that  satisfying even if I had written it out longhand. Though this does have  the ideas I had for exploits or ideas in Naruto. If you have questions  feel free to ask them, I'll try to reply.