Insidedna Stories

Refine by tag:

3 Stories

Reconstructing species phylogeny by shilparaopradeep
#1
Reconstructing species phylogenyby shilparaopradeep
When researchers need to reconstruct a relatively large phylogeny for multiple genes (e.g. sequenced de-novo and obtained from the NCBI database), after source sequences...
Analyzing differential expression of de novo assembled transcriptomes using RSEM by shilparaopradeep
#2
Analyzing differential expression...by shilparaopradeep
We already discussed assembly of single transcriptome in our Tutorial for RNA-Seq de novo assembly using Trinity. To compare transcriptomes of several samples, it is rec...
Variant annotation with SnpEff for human tumor samples by shilparaopradeep
#3
Variant annotation with SnpEff for...by shilparaopradeep
DNA sequencing often aims to reveal special genetic features or differences between sample and reference genome. These genetic variants are commonly stored in VCF-files...