Emma had just come back from the pharmacy picking up what she needed and now she was home and just wanted to be wrapped in Killian's arm apologize and do this together. But when she got home and he wasn't there she knew she just knew he was gone and he wasn't going to come back. So she went upstairs and took a pregnancy test already knowing what the results would be. While she was waiting for the timer to go off she kept trying to talk herself into doing this but of course she was going to do it she wouldn't give up another baby even if hook did leave. She was lost in thought when the alarm on her phone went off. She picked up one of the sticks POSITIVE she tried to tell herself it might she be a false positive but when she flipped over the next one and the one after that she knew it was true she was going to have a baby. She knew she could do it but it still terrified her doing this alone. She kept wondering if he would have stayed if he knew she was pregnant but she wouldn't want him to stay just because of the baby. The next day while David was pacing around the loft trying to process everything she just told him. "So he just left..." David said not finishing his sentence before Emma interrupted "I'm pregnant" Emma blurted out. David turned his head in shock at her he looked at her in pity then hugged her not knowing what to do or say. "If I ever see that pirate again I'm going to kill him" David said. "Can I watch" Emma joked. Later when Regina and Mary Margaret tricked her into coming to a bar and offered her a drink she just set it down and acted like she was drinking she wasn't ready to tell anyone about the baby just yet her dad was an accident she doesn't even know why she told him probably just so someone knew. When she got home Killian's chest was still there she didn't want to even think about him anymore it just hurt to bad. She would probably move back into her parents loft if it weren't for the fact that she was having a baby and needed the space. When she taking the chest out to the shed some started to make noise on the inside and when she opened it, it was a shell and it sounded like Killian. Emma felt horrible after hearing Killian talk she said she was going to see the best in him but the moment she got a chance she saw the worst. But she was so incredibly happy he didn't leave her, he didn't leave them she placed her hand on her stomach and knew everything was going to be ok.
After Blackbeard left Killian in Neverland Killian was running when he finally lost the lost boys and he stopped to catch his breath when he looked around he realized immediately where he was how could he not he kissed the love of his life for the first time the only women he ever wanted to kiss as long as he lived. He let out a little laugh replaying the memory to his self "it definitely wasn't a one time thing" he said to himself and that's the moment he saw it plainly on the ground right next to where he was standing when she pulled his lips to hers for the first time. He knew what it was immediately a baby tree a sprout of true love. The moment he touched it their whole love story flashed before his eyes all the heart break and the love everything that was them and all he could think was god how he loved this woman. He picked it and the moment it left the ground it started to glow.
Emma and Mary Margaret were out in the woods looking for a way to break snow and charming from their sleeping curse when the black fairy and Gideon showed up. "If you think about it I'm helping you from seeing your daughter die because she will die. But Emma you might not have the same. " the Black fairy said flicking her wrist and Emma grunted in pain kneeling down her stomach started to grow she knew the black fairy had sped up her pregnancy. They both disappeared leaving Emma in pain and a very confused Mary Margaret. "Your pregnant" Mary Margaret said in disbelief. "Yeah are you mad I didn't tell you" Emma said in pain. "No I could never be mad at you for this you were scared I get it. Now we should probably get you to the
hospital" Mary Margaret said. "NO" Emma yelled and started panting the contractions were getting closer and stronger. "No hospital you heard the black fairy she's gonna kill my baby" Emma said. "No Emma we won't let that happen now" Mary Margaret said and Emma nodded and along with Mary Margarets help got up and started the painful journey to the hospital. When they got there Emma was minutes away from needing to push. They got her settled in and whale came in. "Ok Emma it's time to push" whale said. "No I can't do this Killian's supposed to be here he has to" Emma said tears blurring her vision. "Emma this baby is coming now weather you like it or not and Killian isn't here right now but he will be soon we will find away to get him back ok now push" Mary Margaret said and Emma nodded and pushed as hard as she could and then again and again till she heard the most beautiful sound in the world her baby girls cries. Whale immediately laid her on Emma and the moment he did she stopped crying happy to be in her mothers arms. Emma couldn't stop the tears from falling she loved her little girl so much already it almost hurt she was the perfect mix of her and Killian.
When the baby tree started glowing couldn't tell what was happening until he found himself in his house , their house "Emma" he yelled but their was no response he ran around the whole house she wasn't there. Then he went into town to grannies, the sheriff station, to her Parents loft she was no where until he was walking on main ST he spotted Henry walking. "Henry" Killian yelled to get his attention. "Killian?" Henry said meeting Killian "how are you here" Henry asked. "I'll explain later where is your mother" Killian asked. "She's in the hospital" Henry said. Killian had every possibility going through his head. He didn't even give Henry a chance to tell him why he just started running towards to hospital. When he got there he went to the front desk and asked where Emma swan was they told him room 815 second floor thanked the receptionist and ran to the stairs to Emma's room finally he was there at the door prepared for the worst. When he opened the door he didn't believe his eyes. Emma looked up from the baby and met his eyes. "Killian?" Emma said in disbelief "aye swan its me" Killian said running to kiss her. They kissed for a long time till a squirming baby got their attention. "Swan?" Killian asked trying to get an explanation out of her. "When Gideon sent you away I was pregnant, and then the black fairy sped up my pregnancy...so now that your all caught up would you like to met your daughter" Emma asked. "I would love nothing more" Killian said trying to hide how nervous he really was. Emma carefully passed the baby to Killian she squirmed at first but then got comfortable in her fathers arms. "Hey there beautiful" Killian soothed. He couldn't believe they had a baby it was so unbelievable but amazing he was already wrapped around her tiny little finger he loved her so much he would do anything for his little girl. He looked up to see Emma now crying. "What's wrong my love" Killian asked. "Nothing I'm just happy" Emma said wiping away her tears. "So does our cygnet have a name" Killian's asked. " cygnet?" Emma asked back. "A baby swan is called a cygnet" Killian replied. "Oh I see I didn't really have time to think of a name but I was maybe thinking Elizabeth" Emma suggested. "That's a perfect name for a perfect little lass I love it our little Elizabeth" Killian said looking back at his daughter. They still didn't know if Emma would be ok the final battle was near but they knew as long as they faced it together they could do anything.